The Insight Journal is an Open Access on-line publication covering the domain of medical image processing and visualization.

The unique characteristics of the Insight Journal include:

- Open-access to articles, data, code, and reviews
- Open peer-review that invites discussion between reviewers and authors
- Emphasis on reproducible science via automated code compilation and testing
- Support for continuous revision of articles, code, and reviews


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An Image Filter for Counting Pixel Neighbors
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This papers describes an image filter that counts the number of neighbors a pixel has storing that value at the pixel's image index. Functionality is provided to 1) adjust the neighborhood size, 2) count only those pixels within a specific value range, and 3) [...]

A GPU-based Implementation of Multimodal Deformable Image Registration Based on Mutual Information or Bhattacharyya Distance
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This paper describes a multimodal deformable image registration method on the GPU. It is a CUDA-based implementation of a paper by E. D'Agostino et. al, ''A viscous fluid model for multimodal non-rigid image registration using mutual information''. In [...]

Simple directional gradients
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It is often useful to be able to compute the component of image gradient in a direction defined by a shape of some form, rather than relative to the image axis. This article introduces a simple method for doing this based on distance transforms that is [...]

An ITK-Based Framework for 2D-3D Registration with Multiple Fixed Images
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This document describes an extension of the Insight Toolkit (ITK, www.itk.org) for 2D-3D registration with multiple fixed images, that is, registration of a three-dimensional dataset to a group of fixed planar projections. 2D-3D registration is possible with [...]

Large Image Streaming using ITKv4
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This document illustrates how to process large images (5 and 23 Gigabytes in size) by taking advantage of the streaming capabilities of the Insight Toolkit ITK. Here we illustrate two scenarios: (a) the case when the image itself is larger than the [...]

VascuSynth: Vascular Tree Synthesis Software
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In previous work, we presented an algorithm to synthesize volumetric images of vascular trees and generate the corresponding ground truth segmentations, bifurcation locations, branch properties, and tree hierarchy. In this work, we provide the software needed [...]

A Simple Command Line Argument Parser
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This document describes the implementation of a simple command line argument parser using the Insight Toolkit ITK. Such a parser may be useful for use in the examples of the ITK. This paper is accompanied with the source code.

Poisson Editing in ITK
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This code provides an implementation of two techniques from ``Poisson Image Editing'' on ITK images. First, we fill a hole in an image given only the pixel values on the boundary. Second, we copy a patch of an image into another image and make the result as [...]

Loopy Belief Propagation on MRFs in ITK
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This code provides a base implementation of Loopy Belief Propagation on MRFs in ITK. We use binary image denoising as an example problem to demonstrate this code. This document is intended only to describe the implementation, not the theory. A complete [...]

Criminisi Inpainting
No opinion
This document presents a system to fill a hole in an image by copying patches from elsewhere in the image. These patches should be a good continuation of the hole boundary into the hole. The patch copying is done in an order which attempts to preserve linear [...]

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Most Recent Reviews
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Worked very well and was easy to build
A Skull-Stripping Filter for ITK
by Jared Becksfort on 2017-09-19 16:03:36
Very interesting work
Isotropic and Steerable Wavelets in N...
by Le Zheng on 2017-06-02 11:07:04
Valuable contribution
A new implementation of...
by Dženan Zukić on 2016-07-28 15:40:50
Simple interface
A Skull-Stripping Filter for ITK
by Todd Jensen on 2016-05-30 08:00:15
A useful function, but with some build...
Walk In A Triangulation : Straight Walk
by Davis Vigneault on 2015-06-09 09:57:49
A meaningful contribution with...
Exact Geometrical Predicate: Point in...
by Davis Vigneault on 2015-06-09 11:10:14
Useful tool for kinetic analysis of PET...
InsightToolkit Kinetic Analysis...
by Matthew Mccormick on 2014-11-21 18:34:13
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