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EM Segmentation: Automatic Tissue Class Intensity Initialization Using K-means
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ABSTRACT Brain tissue segmentation is important in many medical image applications. We augmented the Expectation-Maximization segmentation algorithm in Slicer3 (www.spl.harvard.edu) . Currently, in the EM Segmenter module in Slicer3 user input is necessary to [...]

An ITK Implementation of a Diffusion Tensor Images Resampling Filter
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This paper describes the implementation of a resampling filter for Diffusion Tensor Images (DTI) in the Insight ToolKit (ITK). ITK already contains a filter for resampling scalar and vector images as well as several transformation and interpolation classes. [...]

Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM
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Shape analysis has become of increasing interest to the neuroimaging community due to its potential to precisely locate morphological changes between healthy and pathological structures. This manuscript presents a comprehensive set of tools for the [...]


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