ITK Mesh IO Framework
ITK has a powerful and flexible image IO framework. Reading and writing different types of image file is straightforward. The image IO could be easily extended by writing a specific image IO class for a new image file format. Whereas, there is no such [...]

BioRad file format support
This filter will allow support for file reading and writting in ITK for the Bio-Rad file format.

N4ITK:  Nick's N3 ITK Implementation For MRI Bias Field Correction
Several algorithms exist for correcting the nonuniform intensity in magnetic resonance images caused by field inhomogeneities. These algorithms constitute important preprocessing steps for subsequent image analysis tasks. One such algorithm, known as [...]

Integration of the Java Image Science Toolkit with E-Science Platform
No opinion
Medical image analyses rely on diverse software packages assembled into a “pipeline”. The Java Image Science Toolkit (JIST) has served as a standalone plugin into the Medical Image Processing Analysis and Visualization (MIPAV). We addressed shortcomings [...]

Skull Base Surgery Navigation System Based on Updating Preoperative Images Using Positional Information of Surgical Tools
No opinion
In this paper, we introduce a new concept of surgical navigation which processes information interactively between the real and virtual spaces, namely, updating preoperative images using the positional information of surgical tools. Although the organs are [...]

STL file format MeshIO class for ITK
No opinion
This document describes the implementation of an ITK class to support the reading and writing of Meshes in STL file format. The Meshes are assumed to contain 2D manifolds embedded in a 3D space. In practice, it would be desirable to use this class mostly to [...]

Small Computings for Clinicals and SCCToolKit, OR friendly Trial Package and Software Development Kit
No opinion
This paper is about a design policy for operation-room (OR) friendly research system, software and a software toolkit SCCToolKit for this purpose, and a few examples. Examples are image processor for endoscope, OR event detector, vision based registration of [...]

Document Object Model based XML Handling in ITK
The Insight Segmentation and Registration Toolkit (ITK) previously provided a framework for parsing Extensible Markup Language (XML) documents using the Simple API for XML (SAX) framework. While this programming model is memory efficient, it places most of [...]

A Streaming IO Base Class and Support for Streaming the MRC and VTK File Format
This paper describes our contribution of three new classes to the Insight Toolkit community. We present a new ImageIO base class for streaming image file, along with two derived ImageIO classes for the VTK and the MRC file formats.

Reader/Writer for Analyze Object Maps for ITK
This document describes an addition to the Image IO Library of the Insight Toolkit (ITK). ITK has been able to read in Analyze image files but not the Analyze Object Maps that correspond to the images. Analyze Object maps define regions of interest that are [...]

MR Parameter Map Suite: ITK Classes for Calculating Magnetic Resonance T2 and T1 Parameter Maps
This document describes a suite of new multi-threaded classes for calculating magnetic resonance (MR) T2 and T1 parameter maps implemented using the Insight Toolkit ITK ( Similar to MR diffusion tensor imaging (DTI), MR T2 and T1 parameter maps [...]

DICOM Spatial Transform IO in the Insight Toolkit
No opinion
This document describes a module that extends the Insight Toolkit, ITK, which reads DICOM Spatial Rogistration Object files in itk::Transform's. Currently, DICOM files are read by applying the DCMTK library as a backend. An itk::DCMTKTransformIO class can be [...]

Reading a PTX file into an itkMesh
This document presents a set of classes to read a PTX file (a common file format produced by LiDAR scanners) into an itkMesh object. We propose these classes as addition to the Insight Toolkit ITK (

Numerical Q-Ball Image Reconstruction: an ITK Implementation
This document describes an implementation of David S. Tuch's numerical Q-Ball reconstruction algorithm implemented using the Insight Toolkit ITK ( The document is accompanied with the source code, input data, parameters and output data that were [...]

VascuSynth: Vascular Tree Synthesis Software
In previous work, we presented an algorithm to synthesize volumetric images of vascular trees and generate the corresponding ground truth segmentations, bifurcation locations, branch properties, and tree hierarchy. In this work, we provide the software needed [...]

ITK Image IO interface with Apple iOS
No opinion
We have recently detailed the procedure for building ITK on the iOS. In this work, we contribute itkiOSImageIO , the necessary ITK class that provides the input/output (IO) interface with the repository of images stored on iOS Apple devices, such as the iPod [...]

Minimally Interactive Knowledge-based Coronary Tracking in CTA using a Minimal Cost Path
No opinion
An algorithm for minimally interactive coronary artery tracking is presented. Tracking ability and accuracy results are demonstrated on 16 images CTA images. First, a region of interest is automatically selected and a denoising filter applied. Then, for each [...]

Radial Thickness Calculation and Visualization for Volumetric Layers
Volumetric layers often encountered in medical image analysis are characterized by double and nested bounding surfaces. The thickness of a volumetric layer at a point on the bounding surface is the distance from that point to the opposite surface. There exist [...]

An entropy based multi-thresholding method for semi-automatic segmentation of liver tumors
Liver cancer is the fifth most commonly diagnosed cancer and the third most common cause of death from cancer worldwide. A precise analysis of the lesions would help in the staging of the tumor and in the evaluation of the possible applicable therapies. In [...]

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