Enabling ITK-based processing and 3D Slicer MRML scene management in ParaView
No opinion
This paper documents on-going work to facilitate ITK-based processing and 3D Slicer scene management in ParaView. We believe this will broaden the use of ParaView for high performance computing and visualization in the medical imaging research community. The [...]

Robot assisted prostate surgery using augmented reality with deformable models
No opinion
We present preliminary results of our work to develop an augmented display for improved visualization of the prostate and surrounding critical anatomy for robot-assisted prostate surgery. Prostate cancer is the second leading cause of cancer-related deaths in [...]

Using TubeTK to Automatically Merge Volumes
No opinion
This article describes implementation of a CLI module to merge an image into the space of another adjacent image using the Insight Toolkit. The algorithm constructs a smoothly stitched image out of two or more smaller images. The overlapping regions of the [...]

Implementation of local structure tensor and enhancement anisotropic diffusion filters in ITK
This paper describes implementation of local structure tensor and anisotropic enhancement diffusion filters using the Insight Toolkit. The anisotropic diffusion filters are implemented using ITK's finite difference solver framework. The filters are used to [...]

STL file format MeshIO class for ITK
No opinion
This document describes the implementation of an ITK class to support the reading and writing of Meshes in STL file format. The Meshes are assumed to contain 2D manifolds embedded in a 3D space. In practice, it would be desirable to use this class mostly to [...]

Fostering Open Science in Lung Cancer Lesion Sizing with ITK module LSTK
This document describes the latest efforts in integrating the Lesion Sizing Toolkit (LSTK) into ITK v4 as an external/remote module providing an Open Science dashboard website with a large open image archive of lung cancer CT images for LSTK development and [...]

Rotational Registration of Spherical Surfaces Represented as QuadEdge Meshes
This document describes a contribution to the Insight Toolkit intended to support the process of registering two Meshes. The methods included here are restricted to Meshes with a Spherical geometry and topology, and with scalar values associated to their [...]

BioRad file format support
This filter will allow support for file reading and writting in ITK for the Bio-Rad file format.

Reproducible Research Training at Scipy 2014
No opinion
This article illustrates the process of performing reproducible research with existing open source tools.

DICOM Spatial Transform IO in the Insight Toolkit
No opinion
This document describes a module that extends the Insight Toolkit, ITK, which reads DICOM Spatial Rogistration Object files in itk::Transform's. Currently, DICOM files are read by applying the DCMTK library as a backend. An itk::DCMTKTransformIO class can be [...]

Helper class for initializing the grid parameters of a BSpline deformable transform by using an image as reference
This document describes a simple helper class intended for making easy to initialize the grid parameters of a BSplineDeformableTranform. This paper is accompanied with the source code, input data, parameters and output data that we used for validating the [...]

ITK in Biomedical Research and Commercial Applications
No opinion
The Insight Segmentation and Registration Toolkit ( has become a standard in academia and industry for medical image analysis. In recent years, the ITK developers' community has focused on providing programming interfaces to ITK from Python, Java, [...]

Performance Benchmarking the Insight Toolkit
No opinion
This document describes a module for the Insight Toolkit (ITK) to assist in performance benchmarking and a suite of benchmarks for the toolkit. These resources provide metrics to quantify software computational performance. This is a pre-requisite to improve [...]

ND morphological contour interpolation
No opinion
This document describes a new class, itk::MorphologicalContourInterpolator, which implements a method proposed by Albu et al. in 2008. Interpolation is done by first determining correspondence between shapes on adjacent segmented slices by detecting overlaps, [...]

RLEImage: run-length encoded memory compression scheme for an itk::Image
No opinion
This document describes a new class, itk::RLEImage, which uses run-length encoding to reduce the memory needed for storage of label maps. This class is accompanied by all the iterators to make it a dropin replacement for itk::Image. By changing the image [...]

Vessel Enhancing Diffusion Filter
No opinion
This paper describes vessel enhancing diffusion (VED) filters implemented using the Insight Toolkit (ITK). The filters are implementation of the VED algorithm developed by Manniesing et al . The VED algorithm follows a multiscale approach to enhance [...]

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