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Fast Marching Minimal Path Extraction in ITK
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This paper describes the ITK implementation of a minimal path extraction framework based on Fast Marching arrival functions. The method requires the user to provide three inputs: 1. a meaningful speed function to generate an arrival function, 2. path [...]

The Image-based Vascular Analysis Toolkit (IvanTk)
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This document describes the Image-based Vascular Analysis Toolkit (IvanTk), a set of cross-platform C++ open source software libraries for the detection, extraction and modeling of vessels in 2D/3D medical images based on the Insight Toolkit. We provide an [...]

Automatic Junction Detection for Tubular Structures
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Junctions of tubular structures (vasculature, trachea, neuron, etc) in medical images are critical for the topology of these structures. Identification of them is helpful in many applications. For example, quantification of geometric vascular features, [...]

Tubular Geodesics using Oriented Flux: An ITK Implementation
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This document describes an ITK implementation of an interactive method for tracing curvilinear structures. The basic tools provided in this framework are an oriented flux-based tubularity measure and a geodesic path tracer that uses the fast marching [...]

Coronary Artery Tracking in 3D Cardiac CT Images Using Local Morphological Reconstruction Operators
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Automatic segmentation and tracking of the coronary artery tree from Cardiac Multislice-CT images is an important goal to improve the diagnosis and treatment of coronary artery disease. This paper presents a semi-automatic algorithm (one input point per [...]

Implementation of weighted Dijkstra’s shortest-path algorithm for n-D images
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This paper describes the ITK implementation of a shortest path extraction algorithm based on graph representation of the image and the Dijkstra shortest path algorithm. The method requires the user to provide two inputs: 1. path information in the form of [...]

Coronary Centerline Extraction Using Multiple Hypothesis Tracking and Minimal Paths
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This paper describes an interactive approach to the identification of coronary arteries in 3D angiography images. The approach is based on a novel multiple hypothesis tracking methodology which is complemented with a standard minimal path search, and it [...]


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