An Adaptive Thresholding Image Filter
An Insight Toolkit (ITK) algorithm for adaptively thresholding images is presented in this paper. Currently, the usage of thresholding methods in ITK has made use of global thresholds, confidence connected thresholds and neighborhood strategies. The current [...]

An implementation of the minimization of region-scalable fitting energy levelsets
Intensity inhomogeneities often occur in medical images, especially when using magnetic resonance imaging. In these images, the standard Chan-and-Vese levelset segmentation method may not work properly, as it assumes constant intensity distributions for [...]

N4ITK:  Nick's N3 ITK Implementation For MRI Bias Field Correction
Several algorithms exist for correcting the nonuniform intensity in magnetic resonance images caused by field inhomogeneities. These algorithms constitute important preprocessing steps for subsequent image analysis tasks. One such algorithm, known as [...]

Orientation definition of anisotropy is important to finite element simulation of bone material properties
The assignment of bone material properties to finite element model is a fundamental step in finite element analysis and has great influence on analysis results. Most work done in this area has adopted isotropic assignment strategy as its simplicity. However, [...]

New Expectation Maximization Segmentation Pipeline in Slicer 3
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Many neuroanatomy studies rely on brain tissue segmentation in Magnetic Resonance images (MRI). The Expectation-Maximization (EM) theory offers a popular framework for this task. We studied the EM algorithm developed at the Surgical Planning Laboratory (SPL) [...]

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