Combining labeled images with ITK
Combining some labeled images is a quite common and useful task in image analysis. That's something we may want to do to prepare the markers for a watershed from markers for example, or to write the output of several segmentations in a single file. This [...]

Label overlay
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LabelOverlayImageFilter colorize a label image and put it on top of the input image.

Label object representation and manipulation with ITK
Richard Beare has recently introduced a new filter to efficiently labelize the connected components with ITK, and has also proposed to use the run-length encoding used in that filter to implement some of the most useful binary mathematical morphology [...]

Providing values of adjacent voxel with vtkDiscreteMarchingCubes
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The contribution to VTK presented in this article is an extension to vtk::vtkDiscreteMarchingCubes to also create vtk::vtkPointData scalars containing the value of the adjacent voxel. These can be used to remove regions of the marching-cubes 1 mesh depending [...]

Efficient contour detection in binary and label images
ly in ITK, the only way to find the contour of the objects in a binary image is to use the BinaryErodeImageFilter, with a kernel of radius 1. This filter is a generic filter, made to support any shape and size of structuring element, and thus is not optimized [...]

Multi Atlas Segmentation with Active Shape Model Refinement for Multi-Organ Segmentation in Head and Neck Cancer Radiotherapy Planning
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We describe a segmentation method that was used in the Head and Neck Auto Segmentation Challenge held at the MICCAI 2015 conference. The algorithm consists of two building blocks. First, we employ a multi-atlas segmentation to obtain an initial segmentation [...]

Multi-Atlas Brain MRI Segmentation with Multiway Cut
No opinion
Characterization of anatomical structure of the brain and effi cient algorithms for automatically analyzing brain MRI have gained an increasing interest in recent years. In this paper, we propose an algorithm that automatically segments the anatomical [...]

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