Computing Bone Morphometric Feature Maps from 3-Dimensional Images
| Please use this identifier to cite or link to this publication: http://hdl.handle.net/10380/3588 |
Published in The Insight Journal - 2017 January-December.
Submitted by Jean-baptiste Vimort on 11-02-2017.
This document describes a new remote module implemented for the Insight Toolkit (ITK), itkBoneMorphometry. This module contains bone analysis filters that compute features from N-dimensional images that represent the internal architecture of bone. The computation of the bone morphometry features in this module is based on well known methods. The two filters contained in this module are itkBoneMorphometryFeaturesFilter. which computes a set of features that describe the whole input image in the form of a feature vector, and itkBoneMorphometryFeaturesImageFilter, which computes an N-D feature map that locally describes the input image (i.e. for every voxel). itkBoneMorphometryFeaturesImageFilter can be configured based in the locality of the desired morphometry features by specifying the neighborhood size. This paper is accompanied by the source code, the input data, the choice of parameters and the output data that we have used for validating the algorithms described. This adheres to the fundamental principle that scientific publications must facilitate reproducibility of the reported results.
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Comment by Thomas Janvier
Nice fast implementation. However be careful contrary to what's indicated in the Github description this filter compute Tb.Sp and Tb.Th through the MIL method and not directly on a 3D measure.
Nice fast implementation. However be careful contrary to what's indicated in the Github description this filter compute Tb.Sp and Tb.Th through the MIL method and not directly on a 3D measure.
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| Categories: | CMake, Code speed optimization, Image, Images, Iterators, Optimization |
| Keywords: | Bone Morphometry, Image feature, remote module |
| Tracking Number: | R01EB021391, R01DE024450, R01EB021391 |
| Toolkits: | ITK, CMake |
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