MR Parameter Map Suite: ITK Classes for Calculating Magnetic Resonance T2 and T1 Parameter Maps

Bigler, Don1*,Meadowcroft, Mark,Sun, Xiaoyu,Vesek, Jeffrey,Dresner, Alex,Smith, Michael,Yang, Qing
1.UT Southwestern Medical Center
Abstract

Abstract

This document describes a suite of new multi-threaded classes for calculating magnetic resonance (MR) T2 and T1 parameter maps implemented using the Insight Toolkit ITK (www.itk.org). Similar to MR diffusion tensor imaging (DTI), MR T2 and T1 parameter maps provide a non-invasive means for quantitatively measuring disease or pathology in-vivo. Included in the suite are classes for reading proprietary Bruker 2dseq and Philips PAR/REC images and example programs and data for validating the new classes.

Keywords

voxel-based relaxometrymulti-threaded filterPhilips PAR/RECT1 parameter mapBruker 2dseqT2 parameter map
Manuscript
Source Code and Data

Source Code and Data

SourceBrukerT1Map.cxx11.1 KBBrukerT2Map.cxx8.5 KBCMakeLists.txt4.6 KBDCB021304.oj11acqp5.9 KBfid3 MBgrdprog.r3.6 KBpdata1d3proc503 B2dseq768 KBmeta1001 Bprocs997 Broi1016 Breco2.3 KBimnd4.1 KBpulseprogram11.7 KBspnam07.2 KB2acqp5.8 KBgrdprog.r1.3 KBimnd3.1 KBpdata1meta1001 Breco2.2 KBspnam07.2 KBpulseprogram3.1 KBspnam17.2 KB3acqp5.9 KBfid5.5 MBgrdprog.r1.3 KBimnd3 KBpdata12dseq1.4 MBd3proc505 Bmeta1001 Bprocs992 Breco2.9 KBroi1016 Bpulseprogram3.1 KBspnam07.2 KBspnam17.2 KB5acqp6.1 KBfid1.4 MBgrdprog.r1.9 KBpdata1d3proc505 B2dseq704 KBmeta1001 Bprocs997 Breco2.6 KBroi1016 Bimnd3.4 KBpulseprogram4.1 KBspnam07.2 KBspnam17.2 KB4acqp5.8 KBgrdprog.r1.9 KBimnd3.3 KBpdata1meta1001 Breco2.2 KBspnam07.2 KBpulseprogram4.1 KBspnam17.2 KBsubject941 BIJMacros.txt3.1 KBImageCompare.cxx8 KBPhilipsT1Map.cxx16 KBREADME.txt1.3 KBPhilipsT2Map.cxx12.5 KBT1_LL_10_1.PAR16.6 KBT1_LL_10_1.REC2 MBT2_Map_4_3.PAR13.2 KBT2_Map_4_3.REC3.5 MBbrukert1test.mhd325 Bbrukert1test.raw64 KBbrukert2consttest.raw256 KBbrukert2consttest.mhd365 Bbrukert2exptest.mhd363 Bbrukert2rsqrtest.mhd364 Bbrukert2exptest.raw256 KBbrukert2test.mhd328 Bbrukert2rsqrtest.raw256 KBitkBruker2DSEQImageIO.cxx45.9 KBbrukert2test.raw256 KBitkBruker2DSEQImageIO.h8.2 KBitkBruker2DSEQImageIOFactory.cxx1.5 KBitkBruker2DSEQImageIOFactory.h2.2 KBitkMRT1ParameterMap3DImageFilter.h10 KBitkMRT1ParameterMap3DImageFilter.txx34.2 KBitkMRT2ParameterMap3DImageFilter.h8.5 KBitkMRT2ParameterMap3DImageFilter.txx21.4 KBitkPhilipsPAR.cxx83.2 KBitkPhilipsPAR.h8.4 KBitkPhilipsRECImageIO.cxx29.8 KBitkPhilipsRECImageIO.h7.5 KBitkPhilipsRECImageIOFactory.cxx1.5 KBitkPhilipsRECImageIOFactory.h2.2 KBphilipst1test.mhd316 Bphilipst1test.raw100 KBphilipst2test.mhd316 Bphilipst2test.raw256 KB

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