Open Science Article Submitted: November 10, 2005https://doi.org/10.54294/5yy1ob

Zeiss (LSM) file format support

Mathieu Malaterre^1*

1.BioImaging SAS

Abstract

This filter will allow support for file reading and writting in ITK for the Zeiss (LSM) file format.

Keywords

Zeiss, LSM, Confocal Microscopy

Source Code and Data

No source code files available for this publication.

Reviews

Gaetan Lehmann

Monday 14 November 2005

I successfully run it on my host. I\\\'m able to read lsm files in 3D with the good spacing which is very nice However,

I have to replace

#include \\\\\\\"tiffio/tiffio.h\\\\\\\"

#include \\\\\\\"tiffio.h\\\\\\\"

in itkLSMImageIO.cxx to build the test.

the reader works only if there is only one chanel, and return a quite strange \\\\\\\"Cannot open the file!\\\\\\\" if the lsm contains 2 chanels. You can get a (big) lsm file with 2 chanels at http://voxel.jouy.inra.fr/blastocyste.lsm if needed.

It really nice to have a LSM reader for ITK. Thanks for that work !

Mathieu Malaterre

Monday 14 November 2005

Build errors: There are build errors on the Insight Journal, because the version used is ITK 2.2.1 whereas the code needs ITK CVS, due to some very recent change in ITK CVS, in particular TIFFImageIO and the tiff library.