Mesh Similarity Calculator

Li, Wen1*,Magnotta, Vincent
1.University of Iowa
Abstract

Abstract

This documents is about the filter itkQuadEdgeMeshSimilarityCalculator. It takes inputs of two meshes and gives the similarity of the labels on them in two types of similarity measurements – Dice Similarity and Jaccard Similarity. This paper is accompanied with the source code, input data, parameters and output data that we used for validating the algorithm described in this paper. This adheres to the fundamental principle that scientific publications must facilitate reproducibility of the reported results.

Keywords

JaccardSimilarityQuadEdgeMeshDice
Manuscript
Source Code and Data

Source Code and Data

QuadEdgeMeshFieldSmoothingFilters.svnall-wcprops390 Bentries660 Bformat2 Bprop-baseCMakeLists.txt.svn-base30 Btext-baseCMakeLists.txt.svn-base1.9 KBCTestConfig.cmake.svn-base240 BCMakeLists.txt1.9 KBCTestConfig.cmake240 BData.svnentries263 Ball-wcprops113 Bformat2 BDocuments.svnall-wcprops266 Bentries435 Bformat2 Btext-baseCMakeLists.txt.svn-base34 BCMakeLists.txt34 BReport001.svnformat2 Ball-wcprops2.5 KBentries2.6 KBprop-baseCMakeLists.txt.svn-base30 BLambdaValueAnalysis.ods.svn-base53 BQuadEdgeMeshFieldSmoothingFilters.tex.svn-base54 Bpicins.sty.svn-base30 Btext-baseCMakeLists.txt.svn-base3.5 KBInsightArticle.cls.svn-base4.1 KBInsightJournal.bib.svn-base3.6 KBInsightJournal.ist.svn-base220 BInsightJournal.sty.svn-base35.2 KBLambdaValueAnalysis.ods.svn-base11 KBalgorithm.sty.svn-base2.2 KBQuadEdgeMeshFieldSmoothingFilters.tex.svn-base26.6 KBalgorithmic.sty.svn-base5.4 KBamssymb.sty.svn-base14.9 KBfancyhdr.sty.svn-base14.4 KBfloatflt.sty.svn-base10.8 KBfncychap.sty.svn-base10.1 KBtimes.sty.svn-base857 Bpicins.sty.svn-base17.3 KBCMakeLists.txt3.5 KBInsightArticle.cls4.1 KBInsightJournal.bib3.6 KBInsightJournal.ist220 BInsightJournal.sty35.2 KBLambdaValueAnalysis.ods11 KBQuadEdgeMeshFieldSmoothingFilters.tex26.6 KBalgorithm.sty2.2 KBalgorithmic.sty5.4 KBamssymb.sty14.9 KBfancyhdr.sty14.4 KBfncychap.sty10.1 KBfloatflt.sty10.8 KBtimes.sty857 Bpicins.sty17.3 KBExamples.svnformat2 Ball-wcprops616 Bentries753 Btext-baseSmoothingMeshWithScalars.cxx.svn-base2.4 KBCMakeLists.txt.svn-base439 BSmoothingMeshWithVectors.cxx.svn-base2.6 KBCMakeLists.txt439 BSmoothingMeshWithScalars.cxx2.4 KBSmoothingMeshWithVectors.cxx2.6 KBSource.svnall-wcprops1.9 KBformat2 Bentries1.9 KBprop-baseitkQuadEdgeMeshVTKPolyDataReader.h.svn-base28 BitkQuadEdgeMeshVTKPolyDataReader.txx.svn-base28 BitkQuadEdgeMeshVectorDataVTKPolyDataWriter.h.svn-base28 BitkQuadEdgeMeshVectorDataVTKPolyDataWriter.txx.svn-base28 BitkQuadEdgeMeshVectorPixelValuesSmoothingFilter.h.svn-base28 BitkQuadEdgeMeshVectorPixelValuesSmoothingFilter.txx.svn-base28 Btext-baseCMakeLists.txt.svn-base60 BitkQuadEdgeMeshScalarPixelValuesSmoothingFilter.h.svn-base6.3 KBitkQuadEdgeMeshScalarPixelValuesSmoothingFilter.txx.svn-base4.1 KBitkQuadEdgeMeshVTKPolyDataReader.h.svn-base3.9 KBitkQuadEdgeMeshVTKPolyDataReader.txx.svn-base8.3 KBitkQuadEdgeMeshVectorDataVTKPolyDataWriter.h.svn-base3.9 KBitkQuadEdgeMeshVectorDataVTKPolyDataWriter.txx.svn-base4 KBitkQuadEdgeMeshVectorPixelValuesSmoothingFilter.h.svn-base8 KBitkQuadEdgeMeshVectorPixelValuesSmoothingFilter.txx.svn-base5.6 KBCMakeLists.txt60 BitkQuadEdgeMeshScalarPixelValuesSmoothingFilter.h6.3 KBitkQuadEdgeMeshScalarPixelValuesSmoothingFilter.txx4.1 KBitkQuadEdgeMeshVTKPolyDataReader.h3.9 KBitkQuadEdgeMeshVTKPolyDataReader.txx8.3 KBitkQuadEdgeMeshVectorDataVTKPolyDataWriter.h3.9 KBitkQuadEdgeMeshVectorDataVTKPolyDataWriter.txx4 KBitkQuadEdgeMeshVectorPixelValuesSmoothingFilter.h8 KBitkQuadEdgeMeshVectorPixelValuesSmoothingFilter.txx5.6 KBTesting.svnall-wcprops3.2 KBentries3.3 KBformat2 Bprop-baseScalarMeshRender.cxx.svn-base28 BitkMeshGeneratorHelper.h.svn-base28 BitkMeshGeneratorHelper2.h.svn-base28 BitkMeshGeneratorHelper3.h.svn-base28 BitkMeshGeneratorHelperTest1.cxx.svn-base28 BitkMeshGeneratorHelperTest2.cxx.svn-base28 BitkMeshWriterHelper1.h.svn-base28 BitkMeshGeneratorHelperTest3.cxx.svn-base28 BitkMeshWriterHelper2.h.svn-base28 BitkQuadEdgeMeshVTKPolyDataReader1.cxx.svn-base28 BitkQuadEdgeMeshVTKPolyDataReader2.cxx.svn-base28 BitkQuadEdgeMeshVectorPixelValuesSmoothingFilterTest1.cxx.svn-base28 Btext-baseCMakeLists.txt.svn-base8.4 KBScalarMeshRender.cxx.svn-base6 KBVectorMeshRender.cxx.svn-base6.9 KBitkFilterWatcher.h.svn-base4.8 KBitkMeshGeneratorHelper.h.svn-base5 KBitkMeshGeneratorHelper2.h.svn-base3.1 KBitkMeshGeneratorHelper3.h.svn-base2.8 KBitkMeshGeneratorHelperTest1.cxx.svn-base1.7 KBitkMeshGeneratorHelper4.h.svn-base2.7 KBitkMeshGeneratorHelperTest2.cxx.svn-base1.4 KBitkMeshGeneratorHelperTest4.cxx.svn-base1.5 KBitkMeshGeneratorHelperTest3.cxx.svn-base1.6 KBitkMeshWriterHelper1.h.svn-base1.5 KBitkQuadEdgeMeshScalarPixelValuesSmoothingFilterTest1.cxx.svn-base3.9 KBitkMeshWriterHelper2.h.svn-base1.6 KBitkQuadEdgeMeshVTKPolyDataReader1.cxx.svn-base2 KBitkQuadEdgeMeshVTKPolyDataReader2.cxx.svn-base2.1 KBitkQuadEdgeMeshVectorPixelValuesSmoothingFilterTest1.cxx.svn-base4.6 KBCMakeLists.txt8.4 KBScalarMeshRender.cxx6 KBVectorMeshRender.cxx6.9 KBitkMeshGeneratorHelper.h5 KBitkFilterWatcher.h4.8 KBitkMeshGeneratorHelper2.h3.1 KBitkMeshGeneratorHelper3.h2.8 KBitkMeshGeneratorHelper4.h2.7 KBitkMeshGeneratorHelperTest1.cxx1.7 KBitkMeshGeneratorHelperTest3.cxx1.6 KBitkMeshGeneratorHelperTest2.cxx1.4 KBitkMeshGeneratorHelperTest4.cxx1.5 KBitkMeshWriterHelper1.h1.5 KBitkMeshWriterHelper2.h1.6 KBitkQuadEdgeMeshScalarPixelValuesSmoothingFilterTest1.cxx3.9 KBitkQuadEdgeMeshVTKPolyDataReader1.cxx2 KBitkQuadEdgeMeshVTKPolyDataReader2.cxx2.1 KBitkQuadEdgeMeshVectorPixelValuesSmoothingFilterTest1.cxx4.6 KBUtilities.svnall-wcprops118 Bentries282 Bformat2 BKWStyle.svnall-wcprops1 KBentries1.2 KBformat2 Btext-baseCMakeLists.txt.svn-base307 BITK.kws.xml.in.svn-base682 BITKFiles.txt.in.svn-base100 BITKHeader.h.svn-base695 BITKOverwrite.txt.svn-base70 BKWStyle.cmake.svn-base3.6 KBCMakeLists.txt307 BITK.kws.xml.in682 BITKFiles.txt.in100 BITKHeader.h695 BITKOverwrite.txt70 BKWStyle.cmake3.6 KBQuadEdgeMeshRigidRegistration.svnall-wcprops378 Bformat2 Bentries656 Bprop-baseCMakeLists.txt.svn-base30 Btext-baseCMakeLists.txt.svn-base2.5 KBCTestConfig.cmake.svn-base240 BCMakeLists.txt2.5 KBCTestConfig.cmake240 BData.svnentries271 Ball-wcprops109 Bformat2 BInputSimpleSurface1Small.vtk41.7 KBSimpleSurface1.vtk38.5 KB.svnall-wcprops747 Bformat2 Bentries907 Btext-baseSimpleSurface1.vtk.svn-base38.5 KBSimpleSurface1Small.vtk.svn-base41.7 KBSimpleSurface2.vtk.svn-base38.5 KBSimpleSurface2Small.vtk.svn-base41.7 KBSimpleSurface2.vtk38.5 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KBitkFreeSurferBinarySurfaceReader.txx.svn-base12 KBitkInterpolateMeshFunction.h.svn-base4.7 KBitkInterpolateMeshFunction.txx.svn-base2.5 KBitkLinearInterpolateMeshFunction.h.svn-base6.6 KBitkLinearInterpolateMeshFunction.txx.svn-base11.8 KBitkMeanSquaresMeshToMeshMetric.h.svn-base4.9 KBitkMeshFunction.h.svn-base3.8 KBitkMeanSquaresMeshToMeshMetric.txx.svn-base9.6 KBitkMeshFunction.txx.svn-base1.7 KBitkMeshToMeshMetric.txx.svn-base3.5 KBitkMeshToMeshMetric.h.svn-base6.9 KBitkMeshToMeshRegistrationMethod.h.svn-base7.4 KBitkNearestNeighborInterpolateMeshFunction.h.svn-base3.6 KBitkMeshToMeshRegistrationMethod.txx.svn-base7.8 KBitkNearestNeighborInterpolateMeshFunction.txx.svn-base2.3 KBitkPointLocator2.h.svn-base3.9 KBitkPointLocator2.txx.svn-base2.3 KBitkResampleQuadEdgeMeshFilter.h.svn-base7.3 KBitkResampleQuadEdgeMeshFilter.txx.svn-base6.8 KBitkTriangleBasisSystem.h.svn-base1.9 KBitkTriangleBasisSystem.txx.svn-base2.4 KBitkTriangleBasisSystemCalculator.h.svn-base3.6 KBitkTriangleBasisSystemCalculator.txx.svn-base5.3 KBitkTriangleListBasisSystemCalculator.h.svn-base3.5 KBitkTriangleListBasisSystemCalculator.txx.svn-base2.6 KBCMakeLists.txt60 BitkFreeSurferBinarySurfaceReader.h5.2 KBitkFreeSurferBinarySurfaceReader.txx12 KBitkInterpolateMeshFunction.h4.7 KBitkInterpolateMeshFunction.txx2.5 KBitkLinearInterpolateMeshFunction.h6.6 KBitkLinearInterpolateMeshFunction.txx11.8 KBitkMeanSquaresMeshToMeshMetric.h4.9 KBitkMeanSquaresMeshToMeshMetric.txx9.6 KBitkMeshFunction.h3.8 KBitkMeshFunction.txx1.7 KBitkMeshToMeshMetric.h6.9 KBitkMeshToMeshMetric.txx3.5 KBitkMeshToMeshRegistrationMethod.h7.4 KBitkMeshToMeshRegistrationMethod.txx7.8 KBitkNearestNeighborInterpolateMeshFunction.h3.6 KBitkNearestNeighborInterpolateMeshFunction.txx2.3 KBitkPointLocator2.txx2.3 KBitkPointLocator2.h3.9 KBitkResampleQuadEdgeMeshFilter.h7.3 KBitkResampleQuadEdgeMeshFilter.txx6.7 KBitkTriangleBasisSystem.h1.9 KBitkTriangleBasisSystem.txx2.4 KBitkTriangleBasisSystemCalculator.txx5.3 KBitkTriangleBasisSystemCalculator.h3.6 KBitkTriangleListBasisSystemCalculator.h3.5 KBitkTriangleListBasisSystemCalculator.txx2.6 KBTesting.NoDartCoverage.svnformat2 Bentries5.6 KBall-wcprops5.6 KBprop-baseitkFreeSurferBinarySurfaceReaderTest1.cxx.svn-base30 BitkLinearInterpolateMeshFunctionTest1.cxx.svn-base30 BitkFreeSurferBinarySurfaceReaderTest2.cxx.svn-base30 BitkLinearInterpolateMeshFunctionTest4.cxx.svn-base30 BitkNearestNeighborInterpolateMeshFunctionTest1.cxx.svn-base30 BitkMeshFunctionTest1.cxx.svn-base30 BitkPointLocator2Test1.cxx.svn-base30 BitkTriangleBasisSystemCalculatorTest1.cxx.svn-base30 BitkQuadEdgeMeshKdTreeGeneratorTest.cxx.svn-base30 BitkTriangleBasisSystemTest1.cxx.svn-base30 BitkTriangleListBasisSystemCalculatorTest1.cxx.svn-base30 Btext-base.NoDartCoverage.svn-baseAffineRegistrationMonitor.h.svn-base1.6 KBAffineRegistrationMonitor.cxx.svn-base1.8 KBCMakeLists.txt.svn-base9.5 KBGenerateRegularSphere.cxx.svn-base2.5 KBRegistrationMonitor.h.svn-base4.5 KBRegistrationMonitor.cxx.svn-base11.9 KBitkFreeSurferBinarySurfaceReaderTest1.cxx.svn-base4.1 KBitkFreeSurferBinarySurfaceReaderTest2.cxx.svn-base3.3 KBitkImageToImageRotationRegistrationTest.cxx.svn-base8 KBitkLinearInterpolateMeshFunctionTest1.cxx.svn-base3.5 KBitkLinearInterpolateMeshFunctionTest3.cxx.svn-base9.4 KBitkLinearInterpolateMeshFunctionTest2.cxx.svn-base9 KBitkLinearInterpolateMeshFunctionTest4.cxx.svn-base7.9 KBitkMeanSquaresMeshToMeshMetricTest2.cxx.svn-base7.1 KBitkMeanSquaresMeshToMeshMetricTest1.cxx.svn-base7.1 KBitkMeanSquaresMeshToMeshMetricTest3.cxx.svn-base7.7 KBitkMeshGeneratorHelper.h.svn-base5.8 KBitkMeshFunctionTest1.cxx.svn-base2.2 KBitkMeshToMeshMetricTest1.cxx.svn-base6 KBitkMeshToMeshRegistrationMethodTest2.cxx.svn-base9.2 KBitkMeshToMeshRegistrationMethodTest1.cxx.svn-base6 KBitkMeshToMeshRegistrationMethodTest3.cxx.svn-base5.6 KBitkNearestNeighborInterpolateMeshFunctionTest1.cxx.svn-base3.1 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KBQuadEdgeMeshSphericalDiffeomorphicDemonsRegistration.svnall-wcprops449 Bformat2 Bentries683 Bprop-baseCMakeLists.txt.svn-base30 Btext-baseCMakeLists.txt.svn-base2.4 KBCTestConfig.cmake.svn-base240 BCTestConfig.cmake240 BCMakeLists.txt2.6 KBData.svnall-wcprops132 Bentries294 Bformat2 BInput.svnentries2.6 KBall-wcprops2.8 KBformat2 Bprop-basemovingMeshWithScalarsIC1.vtk.svn-base28 Btext-baseRigidRegistrationSimpleSurface2to1.vtk.svn-base38.6 KBRigidRegistrationSimpleSurface2to1Small.vtk.svn-base40.4 KBSimpleSurface1.vtk.svn-base38.5 KBSimpleSurface1Small.vtk.svn-base41.7 KBSimpleSurface2.vtk.svn-base38.5 KBSimpleSurface2Small.vtk.svn-base41.7 KBfixedMeshWithScalarsIC2.vtk.svn-base2.9 KBfixedMeshWithScalarsIC1.vtk.svn-base803 BfixedMeshWithScalarsIC3.vtk.svn-base12.7 KBmovingMeshWithScalarsIC1.vtk.svn-base803 BfixedMeshWithScalarsIC4.vtk.svn-base53.9 KBmovingMeshWithScalarsIC2.vtk.svn-base2.9 KBmovingMeshWithScalarsIC3.vtk.svn-base12.7 KBmovingMeshWithScalarsIC4.vtk.svn-base53.9 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Bformat2 Btext-baseCMakeLists.txt.svn-base240 BCMakeLists.txt240 BReport002.svnall-wcprops590 Bformat2 Bentries673 Bprop-baseCMakeLists.txt.svn-base30 BQuadEdgeMeshSphericalDiffeomorphicDemonsRegistration2.tex.svn-base30 Btext-baseCMakeLists.txt.svn-base3.4 KBQuadEdgeMeshSphericalDiffeomorphicDemonsRegistration2.tex.svn-base16.4 KBCMakeLists.txt3.4 KBQuadEdgeMeshSphericalDiffeomorphicDemonsRegistration2.tex16.4 KBReport001.svnall-wcprops2.7 KBformat2 Bentries2.5 KBprop-baseCMakeLists.txt.svn-base30 BQuadEdgeMeshSphericalDiffeomorphicDemonsRegistration.tex.svn-base30 Bpicins.sty.svn-base30 Btext-baseCMakeLists.txt.svn-base3.6 KBInsightArticle.cls.svn-base4.1 KBInsightJournal.ist.svn-base220 BInsightJournal.bib.svn-base6.6 KBInsightJournal.sty.svn-base36.3 KBalgorithm.sty.svn-base2.2 KBQuadEdgeMeshSphericalDiffeomorphicDemonsRegistration.tex.svn-base17.4 KBalgorithmic.sty.svn-base5.4 KBamssymb.sty.svn-base14.9 KBfancyhdr.sty.svn-base14.4 KBfloatflt.sty.svn-base10.8 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