VascuSynth: Vascular Tree Synthesis Software

Jassi, Preet1*,Hamarneh, Ghassan
1.Simon Fraser University
Abstract

Abstract

In previous work, we presented an algorithm to synthesize volumetric images of vascular trees and generate the corresponding ground truth segmentations, bifurcation locations, branch properties, and tree hierarchy. In this work, we provide the software needed to simulate these volumes. Our software expects a number of physical parameters and oxygen demand maps to produce 3D volumetric images of vasculature, as well as information about the bifurcation locations, tree hierarchy and branch radii in a GXL file. We foresee our software useful for large scale evaluation studies of medical image segmentation and analysis software.

Keywords

simulation3D imagesground-truthbifurcationvasculaturetree liketubularsegmentationmedical image analysisvalidation
Manuscript
Source Code and Data

Source Code and Data

Source.DS_Store12 KB.svnall-wcprops1.6 KBentries2.4 KBprop-baseCMakeLists.txt.svn-base30 BITKCommon.dll.svn-base79 BMersenneTwister.h.svn-base30 BNodeTable.cpp.svn-base30 BNodeTable.h.svn-base30 BOxygenationMap.cpp.svn-base30 BOxygenationMap.h.svn-base30 BSupplyMap.cpp.svn-base30 BSupplyMap.h.svn-base30 BTreeDrawer.cpp.svn-base30 BTreeDrawer.h.svn-base30 BVascuSynth.cpp.svn-base30 BVascularTree.cpp.svn-base30 BVascularTree.h.svn-base30 Btext-baseCMakeLists.txt.svn-base297 BITKCommon.dll.svn-base1.8 MBMersenneTwister.h.svn-base16.5 KBNodeTable.cpp.svn-base12.9 KBNodeTable.h.svn-base4.7 KBOxygenationMap.cpp.svn-base8.3 KBOxygenationMap.h.svn-base3.3 KBSupplyMap.cpp.svn-base5.5 KBSupplyMap.h.svn-base2.8 KBTreeDrawer.cpp.svn-base12.5 KBTreeDrawer.h.svn-base5.5 KBVascuSynth.cpp.svn-base21.3 KBVascularTree.cpp.svn-base17.5 KBVascularTree.h.svn-base4.6 KBtmpVascuSynth.cpp.tmp18.5 KBCMakeLists.txt297 BITKCommon.dll1.8 MBMersenneTwister.h16.5 KBNodeTable.cpp12.9 KBNodeTable.h4.7 KBOxygenationMap.cpp8.3 KBOxygenationMap.h3.3 KBSupplyMap.cpp5.5 KBSupplyMap.h2.8 KBTreeDrawer.cpp12.5 KBTreeDrawer.h5.5 KBVascuSynth.cpp21.3 KBVascularTree.cpp17.5 KBVascularTree.h4.6 KB

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